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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38554195_38629741_F

Intron Information:

Intron Rank:
132095
Intron Class:
major
Intron Phase:
Intron Coordinates:
38554195 - 38629741
Intron Length:
75547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAG
U12 Branch Point Sequence:
AGGGATTCAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
32.5
Major BPS
50.5
0.01
1.6
63.4
44.3
Major PPT
89.6
0.89
0.7
85
29.8
Minor 5ss
25.2
-2.9
3.2
30.3
43.5
Minor BPS
40.7
-0.6
1.8
52.27
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020976
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039028
38554021 - 38630068
76048