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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38663050_38711339_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38663050 - 38711339
Intron Length:
48290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAGC
5'SS Class:
major
3'SS Sequence:
CCTTTGTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTCCTTCCATC
Flanking Amino Acid:
GFGEKLLPVKDVTTGTPAIS
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.1
67.1
44.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
77.5
0.62
0.8
71.6
33
Minor 5ss
38.3
-1.3
3.1
51.6
45.2
Minor BPS
49.5
-0
1.9
67.75
38.3

Associated Gene:

Gene:
ZNF385D
Ensembl Gene ID:
ENSAPLG00000011365
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030968
38654326 - 38900699
246374
ENSAPLT00000026013
38654326 - 38892141
237816
ENSAPLT00000035917
38654795 - 38852391
197597
ENSAPLT00000035325
38653080 - 38818407
165328
ENSAPLT00000031648
38653080 - 38775833
122754