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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38663050_38718052_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38663050 - 38718052
Intron Length:
55003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAAGCGA
5'SS Class:
major
3'SS Sequence:
CCTTTGTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTCCTTCCATC
Flanking Amino Acid:
NTINTSSDKTDVTTGTPAIS
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
55
43.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
77.5
0.62
0.8
71.6
33
Minor 5ss
25.8
-2.8
3
31
42.4
Minor BPS
49.5
-0
1.9
67.75
38.3

Associated Gene:

Gene:
ZNF385D
Ensembl Gene ID:
ENSAPLG00000011365
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030701
38653080 - 38818407
165328
ENSAPLT00000011818
38654795 - 38891123
236329
ENSAPLT00000044739
38654795 - 38854461
199667
ENSAPLT00000035896
38654795 - 38998807
344013
ENSAPLT00000033001
38654326 - 38912237
257912