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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3869705_3870304_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3869705 - 3870304
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGACC
5'SS Class:
major
3'SS Sequence:
TATCATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AATCTTTTATCA
Flanking Amino Acid:
RSSDLTDRVKKHLLEEKTTN
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
0.9
68.3
36.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.1
0.72
0.9
73.3
41.3
Minor 5ss
34.2
-1.8
3
43.2
44.2
Minor BPS
54.8
0.15
1.5
63.94
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011792
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012297
3869283 - 3887661
18379