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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3870404_3871913_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3870404 - 3871913
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ACCTGTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GAGGTTCTAACT
Flanking Amino Acid:
LIANNFENHWIFWVGPIIGG
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
38.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
71
0.47
1
61
44.1
Minor 5ss
39.1
-1.2
2.8
40.9
45.4
Minor BPS
47.9
-0
1.7
61.79
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011792
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012297
3869283 - 3887661
18379