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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3872570_3887271_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3872570 - 3887271
Intron Length:
14702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTGTCTCCATAT
Flanking Amino Acid:
VPNNLLGLNALSGGVNAGQG
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
69.3
43.2
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
71.9
0.49
0.9
66.3
34.9
Minor 5ss
39.2
-1.2
2.9
49.5
46.5
Minor BPS
43.8
-0.3
2.1
66.17
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011792
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012297
3869283 - 3887661
18379