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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38746838_38786602_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38746838 - 38786602
Intron Length:
39765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TCTCTCTTTACA
Flanking Amino Acid:
AVNLFPNFNAMDPIQKAVIN
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
88.7
0.87
0.7
83.3
25.1
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
63.3
0.41
1.6
72.36
39.3

Associated Gene:

Gene:
ZNF385D
Ensembl Gene ID:
ENSAPLG00000011365
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030701
38653080 - 38818407
165328
ENSAPLT00000035896
38654795 - 38998807
344013
ENSAPLT00000026013
38654326 - 38892141
237816
ENSAPLT00000035325
38653080 - 38818407
165328
ENSAPLT00000044739
38654795 - 38854461
199667
ENSAPLT00000011818
38654795 - 38891123
236329
ENSAPLT00000033001
38654326 - 38912237
257912
ENSAPLT00000030968
38654326 - 38900699
246374
ENSAPLT00000035917
38654795 - 38852391
197597