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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38786746_38891108_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38786746 - 38891108
Intron Length:
104363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TCTTTCTGCACA
Flanking Amino Acid:
EKILTDGSLRGGTCQSPALP
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
73.5
36
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
70.4
0.46
0.9
65.8
35.1
Minor 5ss
33.9
-1.8
3.7
50
46.5
Minor BPS
56.3
0.19
1.9
71.44
41

Associated Gene:

Gene:
ZNF385D
Ensembl Gene ID:
ENSAPLG00000011365
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026013
38654326 - 38892141
237816