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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38866136_38891108_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38866136 - 38891108
Intron Length:
24973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
MDHYELPDFPWGKRR
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
73.5
36
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.7
0.6
0.9
77.8
35.6
Minor 5ss
33.9
-1.8
3.7
50
46.5
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
ZNF385D
Ensembl Gene ID:
ENSAPLG00000011365
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011818
38654795 - 38891123
236329