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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39147243_39147469_F

Intron Information:

Intron Rank:
128556
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
39147243 - 39147469
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTAGTTAA
5'SS Class:
major
3'SS Sequence:
CTAAATAATTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTTCTAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
74.4
31.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
59.8
0.22
1
56.3
43
Minor 5ss
38.3
-1.3
2.7
46.6
41.9
Minor BPS
65.3
0.48
1.7
74.1
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019247
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031195
39146356 - 39148658
2303