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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39162243_39163030_R

Intron Information:

Intron Rank:
135197
Intron Class:
major
Intron Phase:
Intron Coordinates:
39162243 - 39163030
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TACTCTGTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TATTGACGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
75
0.56
0.9
72.6
37.2
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
43.5
-0.4
2.3
68.37
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020097
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032980
39151317 - 39172041
20725