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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39172068_39173741_R

Intron Information:

Intron Rank:
135191
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
39172068 - 39173741
Intron Length:
1674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTACAAATGATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGATTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
57
0.16
1.1
51.8
41.3
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
70.3
0.62
1.2
74.26
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020097
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019787
39172062 - 39186255
14194