About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39180985_39182350_F

Intron Information:

Intron Rank:
135941
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
39180985 - 39182350
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGACA
5'SS Class:
strong_major
3'SS Sequence:
TCCAACATGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTTCTCCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
74.2
35.8
Major BPS
80
0.75
1
78.6
31
Major PPT
49.4
-0
1.2
48.4
38
Minor 5ss
32.6
-2
3.1
41.2
44.8
Minor BPS
58.5
0.26
1.9
75.04
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023204
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041823
39179578 - 39182709
3132