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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39194386_39200186_R

Intron Information:

Intron Rank:
129817
Intron Class:
major
Intron Phase:
Intron Coordinates:
39194386 - 39200186
Intron Length:
5801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTTTCT
5'SS Class:
major
3'SS Sequence:
ATTTTAAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
74.3
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.8
0.45
1
63.7
40.5
Minor 5ss
41.5
-0.9
3.1
59.5
45
Minor BPS
77
0.93
1.1
86.06
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017041
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021329
39193957 - 39209983
16027