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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39195820_39200186_R

Intron Information:

Intron Rank:
129822
Intron Class:
major
Intron Phase:
Intron Coordinates:
39195820 - 39200186
Intron Length:
4367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAG
U12 Branch Point Sequence:
TGGTCTACAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
74.3
37
Major BPS
48.5
-0
1.6
62.9
43.3
Major PPT
100
1.12
0.4
100
0
Minor 5ss
41.5
-0.9
3.1
59.5
45
Minor BPS
44.7
-0.4
2
57.47
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017041
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030974
39195408 - 39212288
16881