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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39200396_39209663_R

Intron Information:

Intron Rank:
129818
Intron Class:
major
Intron Phase:
Intron Coordinates:
39200396 - 39209663
Intron Length:
9268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
TCTCTTGATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTTCTCTTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
73.3
0.52
0.9
68.9
36.3
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
65.8
0.49
1.2
70.93
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017041
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021329
39193957 - 39209983
16027