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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39232923_39241366_F

Intron Information:

Intron Rank:
147872
Intron Class:
major
Intron Phase:
Intron Coordinates:
39232923 - 39241366
Intron Length:
8444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAACT
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATTAACTCATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
72.2
37.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
38.3
-1.3
3.1
56.8
41
Minor BPS
44.9
-0.3
2
66.46
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036498
39232513 - 39241502
8990