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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39260081_39288182_R

Intron Information:

Intron Rank:
139503
Intron Class:
major
Intron Phase:
Intron Coordinates:
39260081 - 39288182
Intron Length:
28102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTACTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
GTCTGTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
82.8
0.74
0.9
73.6
41.5
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
48.9
-0
2
67.55
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022537
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028626
39256141 - 39291030
34890