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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3927975_3948313_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3927975 - 3948313
Intron Length:
20339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ATTTCTTTCACA
Flanking Amino Acid:
IPPLEHCIRTKDVRFY*
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
85.1
0.79
0.7
80.2
31.2
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
71.2
0.66
1.7
81.43
34

Associated Gene:

Gene:
MINDY4
Ensembl Gene ID:
ENSAPLG00000011415
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034180
3927862 - 4019824
91963