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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39293204_39293667_R

Intron Information:

Intron Rank:
139507
Intron Class:
major
Intron Phase:
Intron Coordinates:
39293204 - 39293667
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAATA
5'SS Class:
strong_major
3'SS Sequence:
CCTAATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
GCGCCCCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
81
33.2
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
73.9
0.54
0.9
65.2
40.7
Minor 5ss
36
-1.6
3.2
48.9
46.9
Minor BPS
53.8
0.2
1.7
66.95
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022537
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031772
39291286 - 39293919
2634