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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39304535_39467596_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39304535 - 39467596
Intron Length:
163062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
EITLDPPPNCSAGPKGDNIY
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.9
0.83
0.7
86.2
26.5
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
UBE2E2
Ensembl Gene ID:
ENSAPLG00000005567
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005760
39296352 - 39609657
313306
ENSAPLT00000005752
39296352 - 39505777
209426