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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39481186_39505016_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39481186 - 39505016
Intron Length:
23831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AAGCATTTAATG
Flanking Amino Acid:
ICSLLTDCNPADPLVGSIAT
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.5
0.84
0.7
84.9
29.9
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
49.1
-0.2
1.5
49.39
38.4

Associated Gene:

Gene:
UBE2E2
Ensembl Gene ID:
ENSAPLG00000005567
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005752
39296352 - 39505777
209426