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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3951_5960_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3951 - 5960
Intron Length:
2010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTATTTTTATTT
Flanking Amino Acid:
LLRSQSRDLKVMTDVVGNPE
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.3
30.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.5
0.71
0.9
76.3
37.2
Minor 5ss
37.7
-1.4
3
46.2
49.1
Minor BPS
58.8
0.35
1.5
72.71
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008538
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046030
3263 - 59790
56528
ENSAPLT00000020394
3263 - 88619
85357
ENSAPLT00000018278
3263 - 59790
56528
ENSAPLT00000008903
3822 - 61680
57859