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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39599216_39602337_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
39599216 - 39602337
Intron Length:
3122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGTGTACC
5'SS Class:
weak_major
3'SS Sequence:
TTTATTTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTGAACA
Flanking Amino Acid:
VPLHLVIFLKHLCF
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.2
0.19
1.3
58.8
40.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.1
0.59
1
73.4
40.7
Minor 5ss
39.5
-1.2
2.6
50.9
38.8
Minor BPS
65.8
0.49
1.4
76.56
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005577
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044522
39599203 - 39609532
10330