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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39602526_39608541_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39602526 - 39608541
Intron Length:
6016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
CTCCGTCTAATC
Flanking Amino Acid:
TPEYPFKPPKVTFRTRIYHC
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
85.6
0.8
0.8
80.6
31.4
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
43.6
-0.5
2
51.53
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005577
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044522
39599203 - 39609532
10330