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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39617643_39619040_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39617643 - 39619040
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TGATTTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TCCTGCTTGATT
Flanking Amino Acid:
NALVTHSAAHSLEEGATMED
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
75.4
34.4
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
68.6
0.42
1
63.7
41.5
Minor 5ss
35.4
-1.7
3.5
54.7
43.6
Minor BPS
60
0.4
1.8
74.27
43.5

Associated Gene:

Gene:
NKIRAS1
Ensembl Gene ID:
ENSAPLG00000005623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035222
39614385 - 39623416
9032