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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39617643_39623103_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39617643 - 39623103
Intron Length:
5461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGATAT
5'SS Class:
major
3'SS Sequence:
TGATTTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TCCTGCTTGATT
Flanking Amino Acid:
EQLLYGKHTVGLEEGATMED
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.8
33
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
68.6
0.42
1
63.7
41.5
Minor 5ss
33.7
-1.9
3.1
39
46.2
Minor BPS
60
0.4
1.8
74.27
43.5

Associated Gene:

Gene:
NKIRAS1
Ensembl Gene ID:
ENSAPLG00000005623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005805
39614385 - 39623670
9286