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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39619326_39623103_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
39619326 - 39623103
Intron Length:
3778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGATAT
5'SS Class:
major
3'SS Sequence:
TTATTGCCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATAATTTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.8
33
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.8
0.42
0.9
68.2
38.5
Minor 5ss
33.7
-1.9
3.1
39
46.2
Minor BPS
52.4
0.16
1.8
71.29
39.8

Associated Gene:

Gene:
NKIRAS1
Ensembl Gene ID:
ENSAPLG00000005623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035222
39614385 - 39623416
9032