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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39627000_39628927_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39627000 - 39628927
Intron Length:
1928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTCTCATAGCC
Flanking Amino Acid:
FARSLQSVAEERAGRHCGAL
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
49.5
-0
1.8
65.69
39.3

Associated Gene:

Gene:
RPL15
Ensembl Gene ID:
ENSAPLG00000005626
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005815
39625676 - 39629233
3558