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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39648580_39649539_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39648580 - 39649539
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTTTGTTTACA
Flanking Amino Acid:
YGVHACEGCKGFFRRSIQQN
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
80.8
28.9
Major BPS
80
0.75
1
78.6
31
Major PPT
85.9
0.81
0.9
79.9
37.7
Minor 5ss
33
-1.9
3.4
45.9
49.3
Minor BPS
51.4
0.04
2.3
71.5
40.4

Associated Gene:

Gene:
NR1D2
Ensembl Gene ID:
ENSAPLG00000005753
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045874
39639949 - 39666615
26667
ENSAPLT00000006007
39645302 - 39665128
19827