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Intron Name: Anas_platyrhynchos_platyrhynchos_2_39651943_39655281_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39651943 - 39655281

Intron Length:

3339

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATATTGA

5'SS Class:

major

3'SS Sequence:

TTGTAAATATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

TGTTTTGTAAAT

Flanking Amino Acid:

SCSTGGRMHLVCPMSKTPHV

Intron Amino Acid Position:

427

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.48

62.7

38.1

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

63.2

0.3

61.6

43.3

Minor 5ss

45.1

-0.5

2.6

55.3

44.2

Minor BPS

53.8

0.2

2.1

77.19

39.4

Associated Gene:

Gene:

NR1D2

Ensembl Gene ID:

ENSAPLG00000005753

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045874

39639949 - 39666615

26667

ENSAPLT00000006007

39645302 - 39665128

19827