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Intron Name: Anas_platyrhynchos_platyrhynchos_2_39655468_39659264_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39655468 - 39659264

Intron Length:

3797

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGACCA

5'SS Class:

strong_major

3'SS Sequence:

CTTCCTCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTGT

U12 Branch Point Sequence:

TCTTCCTCCACC

Flanking Amino Acid:

VNLLKAGTFEVLMVRFASLF

Intron Amino Acid Position:

489

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

70.4

35.4

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

0.54

0.9

66.9

34.1

Minor 5ss

26.8

-2.7

2.8

31.2

42.4

Minor BPS

61.1

0.33

74.56

42.5

Associated Gene:

Gene:

NR1D2

Ensembl Gene ID:

ENSAPLG00000005753

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045874

39639949 - 39666615

26667

ENSAPLT00000006007

39645302 - 39665128

19827