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Intron Name: Anas_platyrhynchos_platyrhynchos_2_39659476_39663931_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39659476 - 39663931

Intron Length:

4456

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTCTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TTTTCTTTTCTT

Flanking Amino Acid:

LFTAVVLVSADRSGIENVNS

Intron Amino Acid Position:

559

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

71.4

40.1

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

88.7

0.87

0.6

88.9

20.4

Minor 5ss

31.8

-2.1

3.1

36.7

42.5

Minor BPS

46.2

-0.2

3.6

83.31

38.3

Associated Gene:

Gene:

NR1D2

Ensembl Gene ID:

ENSAPLG00000005753

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045874

39639949 - 39666615

26667

ENSAPLT00000006007

39645302 - 39665128

19827