About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39703152_39704628_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39703152 - 39704628
Intron Length:
1477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTAATGATAATT
Flanking Amino Acid:
LLQAVLLMSSDRPGLVCVER
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.8
0.76
0.8
78.2
35.3
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
46.5
-0.1
2.2
70.07
41

Associated Gene:

Gene:
THRB
Ensembl Gene ID:
ENSAPLG00000006081
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024668
39702910 - 39822764
119855
ENSAPLT00000023697
39702910 - 39840995
138086
ENSAPLT00000019863
39702910 - 39723507
20598
ENSAPLT00000047076
39702910 - 39825135
122226
ENSAPLT00000006344
39702910 - 39729155
26246
ENSAPLT00000027675
39702910 - 39822764
119855