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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39704888_39709136_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39704888 - 39709136
Intron Length:
4249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TATGATTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTTCTTTACCA
Flanking Amino Acid:
FAKKLPMFCELPCEDQIILL
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
79.9
0.67
0.9
73.4
41.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
77.3
0.85
1.5
86.93
31.8

Associated Gene:

Gene:
THRB
Ensembl Gene ID:
ENSAPLG00000006081
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023697
39702910 - 39840995
138086
ENSAPLT00000019863
39702910 - 39723507
20598
ENSAPLT00000047076
39702910 - 39825135
122226
ENSAPLT00000006344
39702910 - 39729155
26246
ENSAPLT00000027675
39702910 - 39822764
119855
ENSAPLT00000024668
39702910 - 39822764
119855