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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39709284_39712360_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39709284 - 39712360
Intron Length:
3077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGACT
5'SS Class:
major
3'SS Sequence:
TTGATATCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTCCTTTAAAT
Flanking Amino Acid:
SHWKQKRKFLPEDIGQAPIV
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
68.8
41.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
69.3
0.43
0.9
67.1
39.3
Minor 5ss
33.7
-1.9
3.5
45.9
43.5
Minor BPS
71.8
0.76
1.3
83.87
36.2

Associated Gene:

Gene:
THRB
Ensembl Gene ID:
ENSAPLG00000006081
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024668
39702910 - 39822764
119855
ENSAPLT00000023697
39702910 - 39840995
138086
ENSAPLT00000019863
39702910 - 39723507
20598
ENSAPLT00000047076
39702910 - 39825135
122226
ENSAPLT00000006344
39702910 - 39729155
26246
ENSAPLT00000027675
39702910 - 39822764
119855