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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39712567_39715023_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39712567 - 39715023
Intron Length:
2457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTATCCCTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATGCTTTTATC
Flanking Amino Acid:
KCIFVGMATDLVLDDSKRLA
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
68.7
0.42
1
63
39.3
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
56.3
0.18
1.7
66.7
39.8

Associated Gene:

Gene:
THRB
Ensembl Gene ID:
ENSAPLG00000006081
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023697
39702910 - 39840995
138086
ENSAPLT00000019863
39702910 - 39723507
20598
ENSAPLT00000047076
39702910 - 39825135
122226
ENSAPLT00000006344
39702910 - 39729155
26246
ENSAPLT00000027675
39702910 - 39822764
119855
ENSAPLT00000024668
39702910 - 39822764
119855