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Intron Name: Anas_platyrhynchos_platyrhynchos_2_39715172_39719400_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39715172 - 39719400

Intron Length:

4229

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATGGC

5'SS Class:

strong_major

3'SS Sequence:

TTATTGCACTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TATTTATTTATT

Flanking Amino Acid:

YRCITCEGCKGFFRRTIQKN

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

36.9

Major BPS

88.7

0.96

0.8

36.5

Major PPT

68.3

0.41

0.9

67.1

39.3

Minor 5ss

32.4

-2

3.3

43.9

Minor BPS

55.8

0.26

1.9

77.76

38.8

Associated Gene:

Gene:

THRB

Ensembl Gene ID:

ENSAPLG00000006081

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023697

39702910 - 39840995

138086

ENSAPLT00000019863

39702910 - 39723507

20598

ENSAPLT00000047076

39702910 - 39825135

122226

ENSAPLT00000006344

39702910 - 39729155

26246

ENSAPLT00000027675

39702910 - 39822764

119855

ENSAPLT00000024668

39702910 - 39822764

119855