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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39719502_39722736_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39719502 - 39722736
Intron Length:
3235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCAGCC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCTTTACA
Flanking Amino Acid:
MTSRGYIPSYLDKD
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.2
59.6
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
96.1
1.04
0.5
91.7
19.5
Minor 5ss
43.3
-0.7
3.2
60.2
44.5
Minor BPS
77.1
0.85
1.5
87.01
30.8

Associated Gene:

Gene:
THRB
Ensembl Gene ID:
ENSAPLG00000006081
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019863
39702910 - 39723507
20598