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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39719502_39728827_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39719502 - 39728827
Intron Length:
9326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCTTTACA
Flanking Amino Acid:
VQSPSYSQKKGYIPSYLDKD
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
96.1
1.04
0.5
91.7
19.5
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
77.1
0.85
1.5
87.01
30.8

Associated Gene:

Gene:
THRB
Ensembl Gene ID:
ENSAPLG00000006081
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006344
39702910 - 39729155
26246