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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39719502_39749773_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39719502 - 39749773
Intron Length:
30272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCTTTACA
Flanking Amino Acid:
MSGYIPSYLDKD
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
79.9
35
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
96.1
1.04
0.5
91.7
19.5
Minor 5ss
43
-0.8
2.9
57.8
46.4
Minor BPS
77.1
0.85
1.5
87.01
30.8

Associated Gene:

Gene:
THRB
Ensembl Gene ID:
ENSAPLG00000006081
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024668
39702910 - 39822764
119855
ENSAPLT00000023697
39702910 - 39840995
138086
ENSAPLT00000047076
39702910 - 39825135
122226
ENSAPLT00000027675
39702910 - 39822764
119855