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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39749839_39752729_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
39749839 - 39752729
Intron Length:
2891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATAATGC
5'SS Class:
major
3'SS Sequence:
CTTTTCTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
GATGTATTACAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1
54.6
37.5
Major BPS
73.9
0.59
1
81
30.2
Major PPT
82.7
0.74
0.9
80.4
31.5
Minor 5ss
43.9
-0.7
3
56.2
43.4
Minor BPS
43.9
-0.3
1.9
59.98
43

Associated Gene:

Gene:
THRB
Ensembl Gene ID:
ENSAPLG00000006081
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027675
39702910 - 39822764
119855