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Intron Name: Anas_platyrhynchos_platyrhynchos_2_39749839_39807675_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

39749839 - 39807675

Intron Length:

57837

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTCGT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTTGGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

GATGTATTACAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

74.7

41.5

Major BPS

73.9

0.59

30.2

Major PPT

82.7

0.74

0.9

80.4

31.5

Minor 5ss

38.4

-1.3

3.1

54.9

42.4

Minor BPS

43.9

-0.3

1.9

59.98

Associated Gene:

Gene:

THRB

Ensembl Gene ID:

ENSAPLG00000006081

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024668

39702910 - 39822764

119855