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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39822765_39825001_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
39822765 - 39825001
Intron Length:
2237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATTTCTTTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.6
35.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
47.8
-0.2
2.9
67.4
44
Minor BPS
71.4
0.75
1.5
85.82
34.8

Associated Gene:

Gene:
THRB
Ensembl Gene ID:
ENSAPLG00000006081
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047076
39702910 - 39825135
122226