Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3985822_3991004_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3985822 - 3991004

Intron Length:

5183

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TCCCGGACCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTGTAT

U12 Branch Point Sequence:

ATTTCCCGGACC

Flanking Amino Acid:

FGDSNRNKDARCLQPSEVHR

Intron Amino Acid Position:

302

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

74.5

37.6

Major BPS

58.9

0.22

1.5

59.6

46.8

Major PPT

61.5

0.26

0.9

53.2

35.4

Minor 5ss

-1.8

2.9

44.5

Minor BPS

57.9

0.23

1.9

74.21

Associated Gene:

Gene:

MINDY4

Ensembl Gene ID:

ENSAPLG00000011415

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034180

3927862 - 4019824

91963

ENSAPLT00000011886

3943432 - 4019824

76393