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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39866408_39868249_R

Intron Information:

Intron Rank:
139122
Intron Class:
major
Intron Phase:
Intron Coordinates:
39866408 - 39868249
Intron Length:
1842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTAAC
5'SS Class:
major
3'SS Sequence:
CCTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
AGTCATGTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76
33
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
87.9
0.85
0.7
83.3
25
Minor 5ss
36.2
-1.6
2.7
42.7
38.5
Minor BPS
45.2
-0.3
2.1
56.84
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022321
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037822
39865635 - 39868472
2838
ENSAPLT00000033467
39864429 - 39868472
4044