About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_39926525_39927178_F

Intron Information:

Intron Rank:
136751
Intron Class:
major
Intron Phase:
Intron Coordinates:
39926525 - 39927178
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGACATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
76.2
0.59
0.9
73.2
36.4
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023665
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032020
39924952 - 39927190
2239
ENSAPLT00000017896
39926260 - 39928277
2018