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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3995316_3995714_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3995316 - 3995714
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
EDQTKDVLELVDVEDEATTG
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
91.7
0.94
0.7
89.8
25.4
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
MINDY4
Ensembl Gene ID:
ENSAPLG00000011415
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034180
3927862 - 4019824
91963
ENSAPLT00000011886
3943432 - 4019824
76393