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Intron Name: Anas_platyrhynchos_platyrhynchos_2_39968638_40092910_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

39968638 - 40092910

Intron Length:

124273

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTCTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TATATTATAATC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.9

80.2

30.6

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

87.9

0.85

0.6

83.5

24.9

Minor 5ss

39.1

-1.2

2.8

40.8

45.4

Minor BPS

53.2

0.08

1.6

64.69

34.7

Associated Gene:

Gene:

RARB

Ensembl Gene ID:

ENSAPLG00000006432

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006723

39968543 - 40280545

312003