Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40007629_40092910_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

40007629 - 40092910

Intron Length:

85282

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAGGTAGC

5'SS Class:

major

3'SS Sequence:

TCTTTTCTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TATATTATAATC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

68.8

42.2

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

87.9

0.85

0.6

83.5

24.9

Minor 5ss

34.8

-1.7

42.1

39.8

Minor BPS

53.2

0.08

1.6

64.69

34.7

Associated Gene:

Gene:

RARB

Ensembl Gene ID:

ENSAPLG00000006432

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048378

40007508 - 40280545

273038